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Running growthcleanr

Copy-and-paste scripts for common cleaning tasks, and how to handle large datasets.

How to get your data into CSV format and back out again
Example scripts
Running growthcleanr from the command line
Large datasets: parallel and checkpointing

Configuration & output

Interpreting and customizing results — no programming required.

Exclusion codes
Output: the cleangrowth() return value

Technical reference

How growthcleanr works inside, for understanding or modifying it. The algorithm vignettes assume no special programming background; the pipeline and testing vignettes assume no growth-domain background. Use whichever matches what you’re changing.

Technical reference: child algorithm
Carried-forward value rescue
Technical reference: adult algorithm
Technical reference: algorithm functions
Deriving the recentering reference medians
Technical reference: the cleangrowth() pipeline
Configuration: arguments and thresholds
Utility functions
Technical reference: testing
Use of AI assistance in growthcleanr development

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